Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915055.1_cds_XP_016464972.1_57962
CDS Infomation

[gene=LOC107787871] [db_xref=GeneID:107787871] [protein=pentatricopeptide repeat-containing protein At3g05340-like] [protein_id=XP_016464972.1] [location=26975..28879] [gbkey=CDS]
Sequence

ATGAGCCTAACCTGCTCACGAGGAATAAGCCTCCTCCTTTCAACTTGTGGAAGGGAACGC
AATGTTCGTCTTGGTTCGTCCATCCATGCCTTCGTTCTCAAAGACCCACAATTTGTGTAT
TTAGGATATCAGTTTAATACCCAGAATGCGCTTGTAGTTTGGAACTCTCTTCTGACGATG
TATGCAAGATGTGGTAGGACAGATGATGCTGCCCAAGTGTTTGATGAAATGTCCATGAAA
GATACCGTTTCATGGAACTCAATTATTTCAGGATTTATGAATAATGGGAATTTTAACATG
GGATTTCGGTACTTCAAAGAAATGATGGGTTCTGGTTGTTTTAAGTTTGATCATGCCAGT
TTGACTACGATTTTATCAGCTTGTGATGGGCGTGGTTTCCTTAGTCTTAACAAGATGATA
CATGGGTTGGTTGTTTTGAGCGGCATGGAGAGGGAAATATCTGTTAGTAACGCATTGGTT
ACTTCTTATTTTCGATGCGGATATGCTAATTCGGGCAGGCAGGTTTTTGTTGAGATGGCT
GTGAGAAATGTTATCTCTTGGACAGCTGTGATTTCAGGTCTTGCTCAAAATGAGTTTTGT
GAGGAAAGCTTGGATTTGCTTGCGAAGATGCAAGGTGCTGTCGTTGTACCTAATTATTTG
ACATACTTAAGTGCACTGTTGGCGTGTTCTGGCATCAAGGCACTCGTGGAGGCTCGTCAA
ATTCATGGGATTGTTTGGAAGTTGGGGTTTCATTCAGATTTGTGTATAAAGAGTGCATTG
ATGGATGTGTATTCCAAGTGTGGCAGTGTACAAGATGCTTGGCAGATGTTTGAGTCCGCG
GAGGTTCTTGACACAATTGCTATGACAGTTATGCTTGTGGGGTTTGCCCAAAATGGATAT
GAAGAAGAGGCTCTGCAGATCTTTGTGAAAATGGTAAAAGCAGGGGTTGACATTGACCCT
GATGTAGTGTCAGCCGTTCTTGGTGTCTTTGGTAGCGATACTTCTTTGGGTCTTGGTAAG
CAAGTGCACTCGTTAATCATCAAGAAAGGTTTCGTTTCAAATTCGTTTGTAAGTAATGGG
CTTATTAACATGTATTCCAAGTGTGGTCAACTGGAGGAATCTGTTGAAATCTTTAATAGT
ATAGCTCGAAAAAATTCAGTCTCTTGGAATTCCATAATTGCAGCCTATGCTCGTCATGGG
AATGGCTATAGGGCACTCCAGTTATACGAAGAGATGAGGTCAGATGGTGTAGATCCAACT
GATGTTACATTCATCTCTCTGCTTCATGCTTGTAGTCATGTTGGGCTAGTAAATAAGGGT
ATGGAATTCTTTGAATCTATGCAGAGTATCTATGGGATGACTCCAAGAATGGAGCATTAT
GCTGCTGTAGTTGACTTGCTTGGTCGAGCTGGACTGCTAAGTGAAGCCAAGAGTTTCATT
GAGGGGCTACCAGTAAAGCCAGACATGCTTATTTGGCAGGCATTACTTGGTGCCTGTAGT
ATTCATGGTGATGCTGAGATGGGAAAATATGCAGCTGATCAATGGGTCTTGGTTTCACCT
GATAATCCTGTGCCATATGTTCTACTGGCAAACATATATTCTTCTAGAGGGCGATGGAAA
GATAGAGCTAGAACCATCAGGAAAATGAAGGAAATGGGAGTGGCAAAGGAGACGGGGACA
AGCTGGATAGAGATTGAGAAGGAAGTCCATAGTTTCGTCGTTGCGGATCAAATGCATCCC
AGAGCCATGATCATTTATTCTACCTTGTCGGAGTTGTTTAGACACATGAGAGATGAAGGG
TATGTACCAGGTAATAGGTTCATTCTGTATTACATGGACAGTGATGAGAAGGAATTTTCT
GTCGATTTGCGAGATACCTCTGAACTTTTGTGCAGCATGTGGTAG

Peptide Sequence

PEP ID

XP_016464972.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Nicotiana tabacum]
Sequence

MSLTCSRGISLLLSTCGRERNVRLGSSIHAFVLKDPQFVYLGYQFNTQNALVVWNSLLTM
YARCGRTDDAAQVFDEMSMKDTVSWNSIISGFMNNGNFNMGFRYFKEMMGSGCFKFDHAS
LTTILSACDGRGFLSLNKMIHGLVVLSGMEREISVSNALVTSYFRCGYANSGRQVFVEMA
VRNVISWTAVISGLAQNEFCEESLDLLAKMQGAVVVPNYLTYLSALLACSGIKALVEARQ
IHGIVWKLGFHSDLCIKSALMDVYSKCGSVQDAWQMFESAEVLDTIAMTVMLVGFAQNGY
EEEALQIFVKMVKAGVDIDPDVVSAVLGVFGSDTSLGLGKQVHSLIIKKGFVSNSFVSNG
LINMYSKCGQLEESVEIFNSIARKNSVSWNSIIAAYARHGNGYRALQLYEEMRSDGVDPT
DVTFISLLHACSHVGLVNKGMEFFESMQSIYGMTPRMEHYAAVVDLLGRAGLLSEAKSFI
EGLPVKPDMLIWQALLGACSIHGDAEMGKYAADQWVLVSPDNPVPYVLLANIYSSRGRWK
DRARTIRKMKEMGVAKETGTSWIEIEKEVHSFVVADQMHPRAMIIYSTLSELFRHMRDEG
YVPGNRFILYYMDSDEKEFSVDLRDTSELLCSMW

Transcript Sequence

Gene sequence data has not been registered.